That article makes perfect sense to me. If Manly had done the appropriate thing in the first place then the NRL wouldn't have to stand in.
Everyone keeps saying 'innocent until proven guilty' but in a drink driving case that certainly isn't the case. Once a person is charged they are almost considered definately guilty and players have been reprimanded and sacked as soon as those charges have been laid.
I don't think there's any doubt that the NRL are taking this stance because of the sexual assault charge, but claiming otherwise for legal reasons or due to their code of conduct. I don't have a problem with that.
If the NRL has the power to stand players down (which they have shown they do), then they can do it. Let them be the ones to determine it, not the clubs. They obviously will overrule clubs if they think it's wrong, so just cut the decision making away from the clubs for more consistent rulings across the board. Let the governing body be under the threat of legal actions if they have jumped the gun too early. Smart move by Manly in my opinion. The NRL would be hoping and praying for a guilty verdict.